Quickstart
==========

Installation
------------

To set up a cell2sentence environment, first pull the repository locally:

.. code-block:: console

   git clone https://github.com/vandijklab/cell2sentence.git

Navigate a terminal into the root of the repository. Next, create an Anaconda environment using python3 using anaconda with:

.. code-block:: console

    conda create -n cell2sentence python=3.8

Next, activate the environment:

.. code-block:: console

    conda activate cell2sentence

Finally, install cell2sentence and other package dependencies:

.. code-block:: console

    make install

This will install the latest development environment of cell2sentence, along with other pacakge dependendies. You can also install cell2sentence itself using pip:

.. code-block:: console

    pip install cell2sentence